Detailed information of SNP:
|
SNP ID:
sf0525459791(Gbrowse)
Chromosome: chr05 Position: 25459791 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 52.37% | 47.63% |
| All Indica | 797 | 90.34% | 9.66% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525459791 | T->A | INTERGENIC | None |