Detailed information of SNP:
|
SNP ID:
sf0525461640(Gbrowse)
Chromosome: chr05 Position: 25461640 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.75% | 44.25% |
| All Indica | 797 | 89.59% | 10.41% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525461640 | T->C | INTERGENIC | None |