Detailed information of SNP:
|
SNP ID:
sf0525467556(Gbrowse)
Chromosome: chr05 Position: 25467556 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 70.29% | 29.71% |
| All Indica | 745 | 98.79% | 1.21% |
| All Japonica | 497 | 29.38% | 70.62% |
| Aus | 6 | 100.00% | 0.00% |
| Indica I | 351 | 99.43% | 0.57% |
| Indica II | 196 | 96.94% | 3.06% |
| Indica Intermediate | 198 | 99.49% | 0.51% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 35 | 62.86% | 37.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525467556 | T->C | INTERGENIC | None |