Detailed information of SNP:
|
SNP ID:
sf0525471355(Gbrowse)
Chromosome: chr05 Position: 25471355 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 75.04% | 24.96% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 56.74% | 43.26% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 45.97% | 54.03% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525471355 | C->T | INTERGENIC | None |