Detailed information of SNP:
|
SNP ID:
sf0525480407(Gbrowse)
Chromosome: chr05 Position: 25480407 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 94.77% | 5.23% |
| All Indica | 666 | 89.94% | 10.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 304 | 82.24% | 17.76% |
| Indica II | 182 | 100.00% | 0.00% |
| Indica Intermediate | 180 | 92.78% | 7.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525480407 | G->A | INTERGENIC | None |