Detailed information of SNP:
|
SNP ID:
sf0525486486(Gbrowse)
Chromosome: chr05 Position: 25486486 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 88.47% | 11.53% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 486 | 68.11% | 31.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 58.48% | 41.52% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525486486 | A->T | INTERGENIC | None |