Detailed information of SNP:
|
SNP ID:
sf0525487586(Gbrowse)
Chromosome: chr05 Position: 25487586 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 88.39% | 11.61% |
| All Indica | 724 | 79.28% | 20.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 86.59% | 13.41% |
| Indica II | 196 | 66.84% | 33.16% |
| Indica Intermediate | 200 | 79.50% | 20.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525487586 | C->T | INTERGENIC | None |