Detailed information of SNP:
|
SNP ID:
sf0525505253(Gbrowse)
Chromosome: chr05 Position: 25505253 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 50.54% | 49.46% |
| All Indica | 782 | 13.81% | 86.19% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 365 | 9.04% | 90.96% |
| Indica II | 209 | 27.27% | 72.73% |
| Indica Intermediate | 208 | 8.65% | 91.35% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525505253 | T->C | INTERGENIC | None |