Detailed information of SNP:
|
SNP ID:
sf0525508815(Gbrowse)
Chromosome: chr05 Position: 25508815 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.58% | 45.42% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525508815 | G->A | INTERGENIC | None |