Detailed information of SNP:
|
SNP ID:
sf0525516731(Gbrowse)
Chromosome: chr05 Position: 25516731 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.10% | 12.90% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 72.64% | 27.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525516731 | C->T | LOC_Os05g43950(LOC_Os05g43950.1) | Non-Synonymous SNP |