Detailed information of SNP:



SNP ID: sf0525527573(Gbrowse)

Chromosome: chr05

Position: 25527573
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 85.34% 14.66%
All Indica799 95.49% 4.51%
All Japonica497 67.81% 32.19%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 84.04% 15.96%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 80.00% 20.00%
Tropical Japonica94 12.77% 87.23%
Japonica Intermediate68 83.82% 16.18%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0525527573 C->T LOC_Os05g43980(LOC_Os05g43980.1) INTRON