Detailed information of SNP:
SNP ID:
sf0525527573(Gbrowse)
Chromosome: chr05 Position: 25527573 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 85.34% | 14.66% |
All Indica | 799 | 95.49% | 4.51% |
All Japonica | 497 | 67.81% | 32.19% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 84.04% | 15.96% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 80.00% | 20.00% |
Tropical Japonica | 94 | 12.77% | 87.23% |
Japonica Intermediate | 68 | 83.82% | 16.18% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0525527573 | C->T | LOC_Os05g43980(LOC_Os05g43980.1) | INTRON |