Detailed information of SNP:
|
SNP ID:
sf0525528881(Gbrowse)
Chromosome: chr05 Position: 25528881 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 97.20% | 2.80% |
| All Indica | 785 | 95.92% | 4.08% |
| All Japonica | 486 | 98.97% | 1.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 329 | 99.09% | 0.91% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525528881 | A->G | INTERGENIC | None |