Detailed information of SNP:
|
SNP ID:
sf0525556985(Gbrowse)
Chromosome: chr05 Position: 25556985 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1307 | 96.56% | 3.44% |
| All Indica | 789 | 99.87% | 0.13% |
| All Japonica | 408 | 89.95% | 10.05% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 204 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 272 | 94.12% | 5.88% |
| Tropical Japonica | 80 | 95.00% | 5.00% |
| Japonica Intermediate | 56 | 62.50% | 37.50% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 34 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525556985 | G->A | INTERGENIC | None |