Detailed information of SNP:
|
SNP ID:
sf0525557977(Gbrowse)
Chromosome: chr05 Position: 25557977 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.68% | 47.32% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525557977 | A->C | LOC_Os05g44050(LOC_Os05g44050.1) | UTR_5_PRIME |