Detailed information of SNP:
|
SNP ID:
sf0525565608(Gbrowse)
Chromosome: chr05 Position: 25565608 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 59.53% | 40.47% |
| All Indica | 796 | 94.72% | 5.28% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525565608 | G->T | INTERGENIC | None |