Detailed information of SNP:
SNP ID:
sf0525577513(Gbrowse)
Chromosome: chr05 Position: 25577513 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 59.59% | 40.41% |
All Indica | 799 | 94.62% | 5.38% |
All Japonica | 497 | 0.60% | 99.40% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 83.10% | 16.90% |
Indica Intermediate | 211 | 98.10% | 1.90% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0525577513 | T->C | INTERGENIC | None |