Detailed information of SNP:
|
SNP ID:
sf0525577527(Gbrowse)
Chromosome: chr05 Position: 25577527 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.41% | 40.59% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525577527 | A->G | INTERGENIC | None |