Detailed information of SNP:
|
SNP ID:
sf0525577546(Gbrowse)
Chromosome: chr05 Position: 25577546 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.46% | 41.54% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525577546 | T->C | INTERGENIC | None |