Detailed information of SNP:
|
SNP ID:
sf0525681335(Gbrowse)
Chromosome: chr05 Position: 25681335 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 96.46% | 3.54% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 30.65% | 69.35% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525681335 | G->A | LOC_Os05g44250(LOC_Os05g44250.1) | Non-Synonymous SNP |