Detailed information of SNP:
|
SNP ID:
sf0525682946(Gbrowse)
Chromosome: chr05 Position: 25682946 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 51.74% | 48.26% |
| All Indica | 793 | 89.41% | 10.59% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525682946 | G->A | INTERGENIC | None |