Detailed information of SNP:
|
SNP ID:
sf0525701101(Gbrowse)
Chromosome: chr05 Position: 25701101 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.90% | 45.10% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525701101 | C->T | LOC_Os05g44280(LOC_Os05g44280.1) | SNPs that introduce stop codons |