Detailed information of SNP:
|
SNP ID:
sf0525731543(Gbrowse)
Chromosome: chr05 Position: 25731543 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 53.65% | 46.35% |
| All Indica | 765 | 93.46% | 6.54% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 355 | 99.44% | 0.56% |
| Indica II | 211 | 80.57% | 19.43% |
| Indica Intermediate | 199 | 96.48% | 3.52% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525731543 | G->C | INTERGENIC | None |