Detailed information of SNP:
|
SNP ID:
sf0525733130(Gbrowse)
Chromosome: chr05 Position: 25733130 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.51% | 45.49% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525733130 | C->T | INTERGENIC | None |