Detailed information of SNP:



SNP ID: sf0525733560(Gbrowse)

Chromosome: chr05

Position: 25733560
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1417 54.06% 45.94%
All Indica798 93.23% 6.77%
All Japonica497 0.40% 99.60%
Aus67 2.99% 97.01%
Indica I375 99.73% 0.27%
Indica II213 77.93% 22.07%
Indica Intermediate210 97.14% 2.86%
Temperate Japonica335 0.60% 99.40%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 7.14% 92.86%
Intermediate41 41.46% 58.54%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0525733560 A->G INTERGENIC None