Detailed information of SNP:
|
SNP ID:
sf0525733560(Gbrowse)
Chromosome: chr05 Position: 25733560 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.06% | 45.94% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525733560 | A->G | INTERGENIC | None |