Detailed information of SNP:
|
SNP ID:
sf0525740382(Gbrowse)
Chromosome: chr05 Position: 25740382 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.37% | 45.63% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525740382 | T->C | LOC_Os05g44330(LOC_Os05g44330.2) | UTR_3_PRIME |
| sf0525740382 | T->C | LOC_Os05g44330(LOC_Os05g44330.1) | UTR_3_PRIME |
| sf0525740382 | T->C | LOC_Os05g44330(LOC_Os05g44330.5) | UTR_3_PRIME |