Detailed information of SNP:
|
SNP ID:
sf0525755132(Gbrowse)
Chromosome: chr05 Position: 25755132 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.82% | 47.18% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525755132 | A->T | INTERGENIC | None |