Detailed information of SNP:
|
SNP ID:
sf0525756960(Gbrowse)
Chromosome: chr05 Position: 25756960 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 87.88% | 12.12% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 462 | 64.29% | 35.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 54.57% | 45.43% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 58 | 65.52% | 34.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525756960 | C->A | INTERGENIC | None |