Detailed information of SNP:
|
SNP ID:
sf0525818852(Gbrowse)
Chromosome: chr05 Position: 25818852 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 56.86% | 43.14% |
| All Indica | 777 | 27.03% | 72.97% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 361 | 23.82% | 76.18% |
| Indica II | 210 | 35.24% | 64.76% |
| Indica Intermediate | 206 | 24.27% | 75.73% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525818852 | A->T | LOC_Os05g44470(LOC_Os05g44470.1) | Non-Synonymous SNP |