Detailed information of SNP:
|
SNP ID:
sf0525834636(Gbrowse)
Chromosome: chr05 Position: 25834636 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 96.98% | 3.02% |
| All Indica | 772 | 95.34% | 4.66% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 99.45% | 0.55% |
| Indica II | 203 | 90.15% | 9.85% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525834636 | T->A | INTERGENIC | None |