Detailed information of SNP:
|
SNP ID:
sf0525846387(Gbrowse)
Chromosome: chr05 Position: 25846387 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 90.95% | 9.05% |
| All Indica | 784 | 92.73% | 7.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 366 | 92.35% | 7.65% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525846387 | T->C | INTERGENIC | None |