Detailed information of SNP:
|
SNP ID:
sf0525882191(Gbrowse)
Chromosome: chr05 Position: 25882191 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 96.41% | 3.59% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525882191 | G->A | LOC_Os05g44590(LOC_Os05g44590.3) | INTRON |
| sf0525882191 | G->A | LOC_Os05g44590(LOC_Os05g44590.4) | INTRON |
| sf0525882191 | G->A | LOC_Os05g44590(LOC_Os05g44590.2) | INTRON |
| sf0525882191 | G->A | LOC_Os05g44590(LOC_Os05g44590.5) | INTRON |