Detailed information of SNP:
|
SNP ID:
sf0525898352(Gbrowse)
Chromosome: chr05 Position: 25898352 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 94.92% | 5.08% |
| All Indica | 787 | 97.33% | 2.67% |
| All Japonica | 413 | 90.80% | 9.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 289 | 96.89% | 3.11% |
| Tropical Japonica | 67 | 64.18% | 35.82% |
| Japonica Intermediate | 57 | 91.23% | 8.77% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525898352 | G->A | INTERGENIC | None |