Detailed information of SNP:
|
SNP ID:
sf0525898367(Gbrowse)
Chromosome: chr05 Position: 25898367 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 98.30% | 1.70% |
| All Indica | 786 | 97.46% | 2.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 18 | 94.44% | 5.56% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 207 | 98.07% | 1.93% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525898367 | C->T | INTERGENIC | None |