Detailed information of SNP:
|
SNP ID:
sf0525911116(Gbrowse)
Chromosome: chr05 Position: 25911116 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 63.75% | 36.25% |
| All Indica | 702 | 38.89% | 61.11% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 52 | 44.23% | 55.77% |
| Indica I | 321 | 38.01% | 61.99% |
| Indica II | 194 | 40.72% | 59.28% |
| Indica Intermediate | 187 | 38.50% | 61.50% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525911116 | T->C | LOC_Os05g44660(LOC_Os05g44660.1) | INTRON |