Detailed information of SNP:
|
SNP ID:
sf0525919910(Gbrowse)
Chromosome: chr05 Position: 25919910 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.59% | 48.41% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525919910 | C->T | INTERGENIC | None |