Detailed information of SNP:
|
SNP ID:
sf0525920754(Gbrowse)
Chromosome: chr05 Position: 25920754 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 56.72% | 43.28% |
| All Indica | 794 | 92.95% | 7.05% |
| All Japonica | 427 | 0.94% | 99.06% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 209 | 82.30% | 17.70% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 283 | 1.06% | 98.94% |
| Tropical Japonica | 84 | 1.19% | 98.81% |
| Japonica Intermediate | 60 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525920754 | C->T | INTERGENIC | None |