Detailed information of SNP:
|
SNP ID:
sf0525951518(Gbrowse)
Chromosome: chr05 Position: 25951518 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 55.18% | 44.82% |
| All Indica | 791 | 87.61% | 12.39% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 368 | 92.12% | 7.88% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525951518 | G->A | INTERGENIC | None |