Detailed information of SNP:
|
SNP ID:
sf0525970993(Gbrowse)
Chromosome: chr05 Position: 25970993 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 89.45% | 10.55% |
| All Indica | 785 | 81.53% | 18.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 73.17% | 26.83% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 207 | 85.02% | 14.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525970993 | C->T | INTERGENIC | None |