Detailed information of SNP:
|
SNP ID:
sf0525982727(Gbrowse)
Chromosome: chr05 Position: 25982727 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 88.97% | 11.03% |
| All Indica | 778 | 80.59% | 19.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 72.63% | 27.37% |
| Indica II | 206 | 92.72% | 7.28% |
| Indica Intermediate | 203 | 82.76% | 17.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525982727 | C->T | LOC_Os05g44792(LOC_Os05g44792.1) | Non-Synonymous SNP |