Detailed information of SNP:
|
SNP ID:
sf0526000946(Gbrowse)
Chromosome: chr05 Position: 26000946 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1267 | 50.12% | 49.88% |
| All Indica | 649 | 83.82% | 16.18% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 285 | 85.61% | 14.39% |
| Indica II | 191 | 78.01% | 21.99% |
| Indica Intermediate | 173 | 87.28% | 12.72% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526000946 | A->G | LOC_Os05g44830(LOC_Os05g44830.1) | INTRON |