Detailed information of SNP:
|
SNP ID:
sf0526006580(Gbrowse)
Chromosome: chr05 Position: 26006580 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1248 | 54.09% | 45.91% |
| All Indica | 637 | 21.82% | 78.18% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 62 | 9.68% | 90.32% |
| Indica I | 293 | 14.33% | 85.67% |
| Indica II | 169 | 37.87% | 62.13% |
| Indica Intermediate | 175 | 18.86% | 81.14% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526006580 | G->A | INTERGENIC | None |