Detailed information of SNP:
|
SNP ID:
sf0526013167(Gbrowse)
Chromosome: chr05 Position: 26013167 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.79% | 42.21% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526013167 | G->C | LOC_Os05g44870(LOC_Os05g44870.1) | Non-Synonymous SNP |