Detailed information of SNP:
|
SNP ID:
sf0526071209(Gbrowse)
Chromosome: chr05 Position: 26071209 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 59.42% | 40.58% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526071209 | G->T | INTERGENIC | None |