Detailed information of SNP:
|
SNP ID:
sf0526094191(Gbrowse)
Chromosome: chr05 Position: 26094191 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.61% | 44.39% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526094191 | G->A | LOC_Os05g44990(LOC_Os05g44990.1) | Non-Synonymous SNP |