Detailed information of SNP:
|
SNP ID:
sf0526111913(Gbrowse)
Chromosome: chr05 Position: 26111913 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 56.40% | 43.60% |
| All Indica | 795 | 87.80% | 12.20% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526111913 | G->A | INTERGENIC | None |