Detailed information of SNP:
|
SNP ID:
sf0526111924(Gbrowse)
Chromosome: chr05 Position: 26111924 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 56.80% | 43.20% |
| All Indica | 796 | 88.07% | 11.93% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526111924 | A->G | INTERGENIC | None |