Detailed information of SNP:
|
SNP ID:
sf0526112727(Gbrowse)
Chromosome: chr05 Position: 26112727 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 55.41% | 44.59% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 65 | 4.62% | 95.38% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526112727 | G->A | INTERGENIC | None |