Detailed information of SNP:
|
SNP ID:
sf0526144954(Gbrowse)
Chromosome: chr05 Position: 26144954 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 97.94% | 2.06% |
| All Indica | 794 | 96.60% | 3.40% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526144954 | G->T | LOC_Os05g45130(LOC_Os05g45130.1) | Non-Synonymous SNP |