Detailed information of SNP:
|
SNP ID:
sf0526255999(Gbrowse)
Chromosome: chr05 Position: 26255999 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.75% | 13.25% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 74.04% | 25.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526255999 | C->T | LOC_Os05g45360(LOC_Os05g45360.1) | Non-Synonymous SNP |