Detailed information of SNP:
|
SNP ID:
sf0526266653(Gbrowse)
Chromosome: chr05 Position: 26266653 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1229 | 93.65% | 6.35% |
| All Indica | 614 | 87.30% | 12.70% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 269 | 74.35% | 25.65% |
| Indica II | 177 | 99.44% | 0.56% |
| Indica Intermediate | 168 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0526266653 | C->T | INTERGENIC | None |